Variant report
| Variant | rs10877160 |
|---|---|
| Chromosome Location | chr12:59169676-59169677 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:59169311..59171344-chr12:59173305..59175772,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000257259 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11172715 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11172741 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11172755 | 0.84[ASN][1000 genomes] |
| rs11172756 | 1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11172760 | 1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11172761 | 0.84[ASN][1000 genomes] |
| rs11172762 | 1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11172765 | 0.84[ASN][1000 genomes] |
| rs11172766 | 0.84[ASN][1000 genomes] |
| rs11172768 | 0.84[ASN][1000 genomes] |
| rs11533605 | 0.84[ASN][1000 genomes] |
| rs11533653 | 0.84[ASN][1000 genomes] |
| rs11559987 | 0.83[ASN][1000 genomes] |
| rs11559988 | 0.84[ASN][1000 genomes] |
| rs12227556 | 0.84[ASN][1000 genomes] |
| rs12230547 | 0.84[ASN][1000 genomes] |
| rs12424316 | 0.84[ASN][1000 genomes] |
| rs1846006 | 0.84[ASN][1000 genomes] |
| rs1846007 | 0.84[ASN][1000 genomes] |
| rs7134877 | 0.84[ASN][1000 genomes] |
| rs7295313 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758311 | chr12:59022729-59323045 | Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 2 | esv2759902 | chr12:59022729-59323045 | Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv1049807 | chr12:59069437-59227711 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv826390 | chr12:59097995-59199786 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 5 | nsv1043385 | chr12:59149582-59758952 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 6 | nsv1067596 | chr12:59167152-59764208 | Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 7 | nsv492251 | chr12:59167152-59764208 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:59169400-59169800 | Enhancers | Pancreatic Islets | Pancreatic Islet |
