Variant report

Variant	rs10877326
Chromosome Location	chr12:60061704-60061705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1027477	0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10506397	0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10877327	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11173102	0.82[AMR][1000 genomes]
rs17122696	0.89[JPT][hapmap];0.84[AMR][1000 genomes]
rs17122775	0.80[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv899131	chr12:59942122-60124089	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60026600-60089200	Weak transcription	Gastric	stomach
2	chr12:60029600-60063200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr12:60045600-60071800	Weak transcription	Ovary	ovary
4	chr12:60045800-60085400	Weak transcription	NHDF-Ad	bronchial
5	chr12:60045800-60099800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:60050000-60068600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr12:60050800-60098600	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr12:60055400-60071000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr12:60058400-60062200	Active TSS	Adipose Nuclei	Adipose
10	chr12:60058800-60080200	Weak transcription	Fetal Heart	heart
11	chr12:60059400-60071600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr12:60059800-60071800	Weak transcription	Psoas Muscle	Psoas
13	chr12:60060000-60061800	ZNF genes & repeats	Primary B cells from cord blood	blood
14	chr12:60060000-60062400	ZNF genes & repeats	Dnd41	blood
15	chr12:60060200-60062000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr12:60060200-60062200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr12:60060400-60061800	ZNF genes & repeats	Primary T cells from cord blood	blood
18	chr12:60060400-60062200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr12:60060600-60062200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr12:60061000-60062400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr12:60061400-60061800	ZNF genes & repeats	Esophagus	oesophagus
22	chr12:60061400-60062200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr12:60061400-60062200	Genic enhancers	Left Ventricle	heart
24	chr12:60061600-60061800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr12:60061600-60061800	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
26	chr12:60061600-60062000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr12:60061600-60062200	ZNF genes & repeats	Aorta	Aorta
28	chr12:60061600-60062200	ZNF genes & repeats	Fetal Stomach	stomach
29	chr12:60061600-60062200	ZNF genes & repeats	Pancreas	Pancrea
30	chr12:60061600-60062200	Enhancers	Right Ventricle	heart
31	chr12:60061600-60071400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr12:60061600-60074800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links