Variant report

Variant	rs10877358
Chromosome Location	chr12:60268415-60268416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10082980	0.87[ASN][1000 genomes]
rs10083053	0.89[ASN][1000 genomes]
rs10747857	0.88[ASN][1000 genomes]
rs10784011	0.89[ASN][1000 genomes]
rs4758751	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7315756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7960213	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2751107	chr12:60252000-60353533	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60242200-60295600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:60266800-60270000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr12:60267600-60268600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr12:60267800-60269800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:60268000-60268600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr12:60268000-60269600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr12:60268400-60268600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr12:60268400-60268800	Enhancers	Fetal Intestine Large	intestine
9	chr12:60268400-60269400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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