Variant report
| Variant | rs10877425 |
|---|---|
| Chromosome Location | chr12:60751330-60751331 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1021887 | 0.81[CEU][hapmap];0.86[AMR][1000 genomes] |
| rs10784046 | 0.86[AMR][1000 genomes] |
| rs10877422 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11173418 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12231371 | 0.80[CEU][hapmap] |
| rs1319633 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1504459 | 0.81[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1504462 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1504463 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1504464 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1566847 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1580916 | 0.82[AMR][1000 genomes] |
| rs1604865 | 0.86[AMR][1000 genomes] |
| rs1604866 | 0.86[AMR][1000 genomes] |
| rs1827638 | 0.85[AMR][1000 genomes] |
| rs2102257 | 0.84[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2262939 | 0.84[AMR][1000 genomes] |
| rs2455998 | 0.81[AMR][1000 genomes] |
| rs2655842 | 0.86[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2655843 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2655846 | 0.86[AMR][1000 genomes] |
| rs2655848 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2655856 | 0.85[AMR][1000 genomes] |
| rs2655893 | 0.84[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2731487 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2731488 | 0.86[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2731491 | 0.84[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2731492 | 0.84[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs7975549 | 0.86[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899137 | chr12:60568891-60797083 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1054287 | chr12:60601870-60861866 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv832431 | chr12:60626292-60809233 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1047466 | chr12:60702221-61521156 | Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 5 | nsv983465 | chr12:60721408-60752940 | Enhancers Weak transcription Flanking Active TSS | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | esv2762983 | chr12:60735475-60767081 | Enhancers Active TSS Weak transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:60750800-60753000 | Enhancers | Fetal Intestine Large | intestine |
