Variant report

Variant	rs10877899
Chromosome Location	chr12:63029853-63029854
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:62995253..63000922-chr12:63028846..63036538,11	MCF-7	breast:
2	chr12:63018644..63021186-chr12:63028824..63030627,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257354	Chromatin interaction
ENSG00000199179	Chromatin interaction
ENSG00000221949	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10735910	0.95[JPT][hapmap]
rs10747968	0.95[JPT][hapmap]
rs10877895	0.94[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];0.90[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10877896	0.80[GIH][hapmap]
rs10877897	0.92[CEU][hapmap];0.85[JPT][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10877898	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174574	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12582199	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2359381	0.91[JPT][hapmap]
rs4763184	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.95[ASN][1000 genomes]
rs7308938	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs925461	0.95[JPT][hapmap]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63026600-63032600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:63026600-63034200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:63026600-63049800	Weak transcription	Right Atrium	heart
4	chr12:63027200-63034000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:63027600-63030600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:63028000-63031800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr12:63028800-63030000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr12:63028800-63030000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr12:63028800-63030200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr12:63028800-63030400	Enhancers	HepG2	liver
11	chr12:63029000-63030400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr12:63029000-63031400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr12:63029200-63030000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr12:63029200-63030000	Enhancers	Brain Angular Gyrus	brain
15	chr12:63029200-63030000	Enhancers	Brain Hippocampus Middle	brain
16	chr12:63029200-63030400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr12:63029200-63030400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr12:63029200-63030400	Enhancers	Brain Anterior Caudate	brain
19	chr12:63029200-63030400	Enhancers	Brain Cingulate Gyrus	brain
20	chr12:63029200-63030400	Enhancers	Brain Substantia Nigra	brain
21	chr12:63029400-63030000	Enhancers	Osteobl	bone
22	chr12:63029400-63030200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr12:63029400-63030400	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr12:63029400-63030400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr12:63029400-63030400	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr12:63029600-63032800	Weak transcription	A549	lung
27	chr12:63029800-63030000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links