Variant report

Variant	rs10877968
Chromosome Location	chr12:63543185-63543186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10747983	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10784339	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10877969	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10877977	0.94[ASN][1000 genomes]
rs10877981	0.88[ASN][1000 genomes]
rs10877991	0.94[ASN][1000 genomes]
rs10877992	0.94[ASN][1000 genomes]
rs11174810	0.81[CHD][hapmap]
rs11174811	0.91[CEU][hapmap];0.86[MEX][hapmap]
rs11174816	0.81[CHD][hapmap]
rs11174842	0.94[ASN][1000 genomes]
rs11833161	0.82[ASN][1000 genomes]
rs1812477	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3021528	0.81[CHD][hapmap]
rs3021529	0.91[CEU][hapmap];0.86[MEX][hapmap]
rs3741865	0.81[CHD][hapmap]
rs3803107	0.94[ASW][hapmap];1.00[CEU][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.88[MKK][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61936378	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7294536	0.98[ASN][1000 genomes]
rs7298346	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7305988	0.90[ASN][1000 genomes]
rs7308441	0.94[ASN][1000 genomes]
rs7312257	0.94[ASN][1000 genomes]
rs7315832	0.94[ASN][1000 genomes]
rs7316075	0.94[ASN][1000 genomes]
rs7358709	0.91[ASN][1000 genomes]
rs7961403	0.91[ASN][1000 genomes]
rs7962106	0.89[ASN][1000 genomes]
rs7972829	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1046836	chr12:63392391-64377169	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	nsv469592	chr12:63486510-63679139	Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv482578	chr12:63486510-63679139	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv832436	chr12:63503993-63658112	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1035736	chr12:63526274-63920372	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv541510	chr12:63526274-63920372	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv2761742	chr12:63537412-63582333	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1035231	chr12:63537412-63582333	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv899164	chr12:63540476-63611633	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63540400-63543200	Active TSS	Adipose Nuclei	Adipose
2	chr12:63541400-63543800	Active TSS	Liver	Liver
3	chr12:63542000-63543200	Active TSS	Fetal Muscle Leg	muscle
4	chr12:63542200-63543400	Active TSS	Fetal Stomach	stomach
5	chr12:63542600-63543800	Bivalent/Poised TSS	Right Ventricle	heart
6	chr12:63542600-63545200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr12:63542800-63545000	Bivalent Enhancer	Fetal Brain Male	brain
8	chr12:63543000-63543200	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
9	chr12:63543000-63543800	Bivalent/Poised TSS	Fetal Brain Female	brain

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