Variant report
Variant | rs10878044 |
---|---|
Chromosome Location | chr12:63787402-63787403 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr12:63779288..63781863-chr12:63785380..63788131,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10467073 | 0.92[ASN][1000 genomes] |
rs10878037 | 0.81[ASN][1000 genomes] |
rs10878038 | 0.81[ASN][1000 genomes] |
rs10878043 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs11174934 | 0.84[ASN][1000 genomes] |
rs11174940 | 0.81[ASN][1000 genomes] |
rs11174954 | 0.92[ASN][1000 genomes] |
rs11174955 | 0.92[ASN][1000 genomes] |
rs11174957 | 0.98[ASN][1000 genomes] |
rs1146108 | 0.81[ASN][1000 genomes] |
rs12226978 | 0.92[ASN][1000 genomes] |
rs12231031 | 0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12309753 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1251774 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1251784 | 0.84[EUR][1000 genomes] |
rs1251785 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs499855 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs503713 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs544710 | 0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs575024 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs73320274 | 0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs73321936 | 0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7342410 | 0.92[ASN][1000 genomes] |
rs7979155 | 0.84[ASN][1000 genomes] |
rs9805075 | 0.98[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1046836 | chr12:63392391-64377169 | Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
2 | nsv1035736 | chr12:63526274-63920372 | Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv541510 | chr12:63526274-63920372 | Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv1052866 | chr12:63562442-63879794 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
5 | nsv541511 | chr12:63562442-63879794 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
6 | nsv832439 | chr12:63688083-63865226 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
7 | nsv1044694 | chr12:63746069-63920831 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
8 | esv2422401 | chr12:63778527-64017057 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:63782000-63787600 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
2 | chr12:63787200-63787800 | Enhancers | Fetal Kidney | kidney |
3 | chr12:63787200-63788600 | Enhancers | Stomach Mucosa | stomach |