Variant report

Variant	rs10878106
Chromosome Location	chr12:64521567-64521568
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64519614..64522178-chr12:64614567..64616218,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243024	Chromatin interaction
ENSG00000174206	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10747998	0.82[AFR][1000 genomes]
rs11175258	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64487400-64526600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr12:64491800-64523600	Weak transcription	HUVEC	blood vessel
3	chr12:64493200-64523600	Weak transcription	Brain Angular Gyrus	brain
4	chr12:64498400-64538400	Weak transcription	Small Intestine	intestine
5	chr12:64506600-64527000	Weak transcription	Colon Smooth Muscle	Colon
6	chr12:64506800-64527200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr12:64510600-64527200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr12:64511000-64523400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:64511000-64530200	Weak transcription	Right Atrium	heart
10	chr12:64511200-64539400	Weak transcription	HepG2	liver
11	chr12:64514600-64522400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr12:64514800-64535800	Weak transcription	Hela-S3	cervix
13	chr12:64517000-64521800	Strong transcription	NHEK	skin
14	chr12:64518000-64527200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr12:64518400-64525400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr12:64518800-64523200	Strong transcription	NHLF	lung
17	chr12:64519000-64522800	Strong transcription	HSMM	muscle
18	chr12:64519200-64523800	Weak transcription	Placenta	Placenta
19	chr12:64519200-64527200	Strong transcription	A549	lung
20	chr12:64519400-64523000	Strong transcription	Osteobl	bone
21	chr12:64519600-64524400	Strong transcription	HSMMtube	muscle
22	chr12:64519600-64525600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr12:64519600-64525800	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr12:64519600-64526600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr12:64519800-64522600	Strong transcription	HMEC	breast
26	chr12:64519800-64525000	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr12:64519800-64525200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr12:64519800-64529200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr12:64520000-64521600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr12:64520000-64522800	Strong transcription	NHDF-Ad	bronchial
31	chr12:64520000-64526000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr12:64520000-64526400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr12:64520000-64526600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr12:64520000-64527200	Strong transcription	Fetal Muscle Trunk	muscle
35	chr12:64520200-64523600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr12:64520200-64524000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr12:64520200-64527200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr12:64520400-64523200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr12:64520600-64525400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr12:64520600-64527200	Strong transcription	Fetal Brain Female	brain
41	chr12:64520800-64522000	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr12:64520800-64522000	Strong transcription	Spleen	Spleen
43	chr12:64520800-64522400	Strong transcription	Brain Cingulate Gyrus	brain
44	chr12:64520800-64522400	Strong transcription	Right Ventricle	heart
45	chr12:64520800-64522800	Strong transcription	Brain Hippocampus Middle	brain
46	chr12:64520800-64523200	Strong transcription	Aorta	Aorta
47	chr12:64520800-64525200	Strong transcription	Stomach Smooth Muscle	stomach
48	chr12:64520800-64526800	Strong transcription	Adipose Nuclei	Adipose
49	chr12:64520800-64527000	Strong transcription	Brain Anterior Caudate	brain
50	chr12:64520800-64527200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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