Variant report

Variant	rs10878114
Chromosome Location	chr12:64559316-64559317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1021665	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10748001	0.82[EUR][1000 genomes]
rs10748002	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10784384	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10784385	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10878110	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10878111	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10878115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878116	0.82[EUR][1000 genomes]
rs10878117	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11175269	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11175270	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11175271	0.83[ASN][1000 genomes]
rs4763139	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs699633	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs722526	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64554600-64560600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr12:64554600-64563400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr12:64554600-64563400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:64554600-64563600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr12:64555000-64563800	Weak transcription	Osteobl	bone
6	chr12:64555200-64563600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr12:64558800-64559600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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