Variant report
| Variant | rs10878567 |
|---|---|
| Chromosome Location | chr12:67522572-67522573 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000255976 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10784605 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10784606 | 0.89[EUR][1000 genomes] |
| rs10784609 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10878559 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs10878561 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11176577 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12833688 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1465026 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1526839 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4244070 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6581740 | 0.88[EUR][1000 genomes] |
| rs7311137 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7974866 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7980101 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs941096 | 0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv541524 | chr12:67311057-67700349 | Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv559212 | chr12:67373549-67850925 | Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
