Variant report

Variant	rs10878602
Chromosome Location	chr12:40846865-40846866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10878603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11176655	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11564230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12581232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1388782	0.91[ASN][1000 genomes]
rs1388784	0.92[ASN][1000 genomes]
rs1427259	0.83[JPT][hapmap]
rs1427261	0.83[JPT][hapmap]
rs1444215	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1816207	0.83[JPT][hapmap]
rs2588395	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2588414	0.91[ASN][1000 genomes]
rs2588417	0.90[ASN][1000 genomes]
rs2638866	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2638868	0.90[ASN][1000 genomes]
rs2638877	0.85[ASN][1000 genomes]
rs2638881	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2920813	0.91[ASN][1000 genomes]
rs2920832	0.91[ASN][1000 genomes]
rs2933346	0.89[ASN][1000 genomes]
rs2933353	0.92[ASN][1000 genomes]
rs2933354	0.91[ASN][1000 genomes]
rs2933364	0.91[ASN][1000 genomes]
rs2933379	0.92[ASN][1000 genomes]
rs2933380	0.92[ASN][1000 genomes]
rs3861083	0.83[JPT][hapmap]
rs4099579	0.83[JPT][hapmap]
rs6581723	0.83[JPT][hapmap]
rs7136122	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832377	chr12:40704881-40855223	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv558606	chr12:40837331-40863052	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv526848	chr12:40843836-40848113	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40846600-40847400	Enhancers	A549	lung
2	chr12:40846800-40848200	Enhancers	HUES48 Cell Line	embryonic stem cell

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