Variant report

Variant	rs10879828
Chromosome Location	chr12:75111646-75111647
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10748263	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10748264	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10879829	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11180183	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11180185	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11832067	0.83[EUR][1000 genomes]
rs1828127	0.81[EUR][1000 genomes]
rs35311378	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4351886	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7314330	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7314793	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7316173	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7971770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7972303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs906564	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899297	chr12:75045728-75169675	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv899298	chr12:75045728-75173289	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv427915	chr12:75047293-75172692	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv832460	chr12:75082963-75260727	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv899299	chr12:75105972-75275196	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2757512	chr12:75109801-75213909	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2759910	chr12:75109801-75213909	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv975635	chr12:75110190-75117673	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv2560297	chr12:75110363-75116875	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv2547667	chr12:75111107-75116296	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv2015769	chr12:75111392-75115656	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3489163	chr12:75111442-75115579	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3489141	chr12:75111489-75115556	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3489130	chr12:75111511-75115503	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3489152	chr12:75111561-75115474	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv3489175	chr12:75111561-75115474	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:75110800-75116600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links