Variant report

Variant	rs10880153
Chromosome Location	chr12:42162119-42162120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10748314	0.93[EUR][1000 genomes]
rs10748315	0.93[EUR][1000 genomes]
rs10748316	0.93[EUR][1000 genomes]
rs10785287	0.92[EUR][1000 genomes]
rs10785288	0.93[EUR][1000 genomes]
rs10785291	0.93[EUR][1000 genomes]
rs10880146	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10880147	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10880150	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10880152	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10880155	0.93[EUR][1000 genomes]
rs10880156	0.93[EUR][1000 genomes]
rs10880157	0.93[EUR][1000 genomes]
rs11181141	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11181142	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11181143	0.93[EUR][1000 genomes]
rs11181145	0.93[EUR][1000 genomes]
rs11181146	0.92[EUR][1000 genomes]
rs11181147	0.93[EUR][1000 genomes]
rs12366278	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12425853	0.93[EUR][1000 genomes]
rs73124280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7956552	0.93[EUR][1000 genomes]
rs7958106	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7966474	0.93[EUR][1000 genomes]
rs869589	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs871393	0.93[EUR][1000 genomes]
rs9943756	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv832386	chr12:42017259-42189476	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv899045	chr12:42118062-42174431	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1047870	chr12:42158954-42254373	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
7	nsv1041975	chr12:42159517-42254373	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
8	nsv1037646	chr12:42160758-42254373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42158600-42165600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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