The 2.0 version of rSNPBase

Variant report

Variant rs10880261
Chromosome Location chr12:42573822-42573823
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:99 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:42539400-42577000 Weak transcription Aorta Aorta
2 chr12:42539400-42583200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
3 chr12:42539600-42574000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr12:42539600-42578400 Weak transcription Left Ventricle heart
5 chr12:42539600-42586000 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr12:42539800-42582800 Weak transcription Spleen Spleen
7 chr12:42539800-42607800 Weak transcription Pancreas Pancrea
8 chr12:42540000-42574800 Weak transcription Brain Anterior Caudate brain
9 chr12:42547800-42610400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
10 chr12:42549400-42575000 Weak transcription Brain Angular Gyrus brain
11 chr12:42550600-42615800 Weak transcription Primary T killer memory cells from peripheral blood blood
12 chr12:42552000-42604000 Weak transcription Stomach Smooth Muscle stomach
13 chr12:42552200-42574800 Weak transcription Brain Inferior Temporal Lobe brain
14 chr12:42552200-42591200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr12:42552200-42613000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
16 chr12:42552400-42620000 Weak transcription Fetal Brain Female brain
17 chr12:42552600-42578800 Weak transcription Lung lung
18 chr12:42553600-42590000 Weak transcription Primary T helper naive cells fromperipheralblood blood
19 chr12:42554000-42607600 Weak transcription Rectal Smooth Muscle rectum
20 chr12:42554400-42578600 Weak transcription Thymus Thymus
21 chr12:42554600-42592200 Weak transcription Primary T helper naive cells from peripheral blood blood
22 chr12:42555000-42628600 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr12:42555200-42574800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
24 chr12:42555200-42575400 Weak transcription NH-A brain
25 chr12:42555200-42576400 Weak transcription Skeletal Muscle Female skeletal muscle
26 chr12:42555200-42586000 Weak transcription Fetal Lung lung
27 chr12:42555200-42590000 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr12:42555400-42598000 Weak transcription Primary T helper cells PMA-I stimulated --
29 chr12:42555600-42586400 Weak transcription Hela-S3 cervix
30 chr12:42556200-42578400 Weak transcription Primary T regulatory cells fromperipheralblood blood
31 chr12:42556600-42575000 Weak transcription Muscle Satellite Cultured Cells --
32 chr12:42556600-42578600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr12:42556800-42613200 Weak transcription HMEC breast
34 chr12:42557000-42581800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr12:42557000-42604000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr12:42557200-42580400 Weak transcription GM12878-XiMat blood
37 chr12:42557200-42606800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr12:42558000-42602400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
39 chr12:42561000-42580400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
40 chr12:42561400-42575000 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr12:42563200-42608000 Weak transcription Small Intestine intestine
42 chr12:42565400-42587400 Weak transcription Breast Myoepithelial Primary Cells Breast
43 chr12:42566000-42588600 Weak transcription Placenta Placenta
44 chr12:42566400-42578400 Weak transcription Liver Liver
45 chr12:42567400-42574800 Weak transcription Primary neutrophils fromperipheralblood blood
46 chr12:42567600-42575200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
47 chr12:42567800-42574800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr12:42568400-42575000 Weak transcription Psoas Muscle Psoas
49 chr12:42568400-42580000 Weak transcription Primary B cells from peripheral blood blood
50 chr12:42568400-42584400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015