Variant report

Variant	rs10881108
Chromosome Location	chr12:47816463-47816464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10431525	1.00[EUR][1000 genomes]
rs10881111	1.00[EUR][1000 genomes]
rs11168119	1.00[EUR][1000 genomes]
rs11183944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12230246	0.84[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558785	chr12:47740440-48044011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47802200-47820000	Weak transcription	Aorta	Aorta
2	chr12:47808000-47818800	Weak transcription	Hela-S3	cervix
3	chr12:47815200-47818600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr12:47815800-47817600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:47816000-47816600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr12:47816000-47817000	Enhancers	Colon Smooth Muscle	Colon
7	chr12:47816200-47817000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:47816200-47820000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr12:47816400-47816600	Enhancers	NHDF-Ad	bronchial
10	chr12:47816400-47816800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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