Variant report

Variant	rs10881853
Chromosome Location	chr10:92678059-92678060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92670581..92673630-chr10:92677940..92680636,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10509609	0.81[JPT][hapmap]
rs11592512	0.81[JPT][hapmap]
rs11596518	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs11596739	0.85[ASN][1000 genomes]
rs1296196	0.80[JPT][hapmap]
rs55958759	0.85[ASN][1000 genomes]
rs56043086	0.85[ASN][1000 genomes]
rs56369629	0.86[ASN][1000 genomes]
rs66533440	0.81[ASN][1000 genomes]
rs66795651	0.86[ASN][1000 genomes]
rs67521227	0.85[ASN][1000 genomes]
rs68143152	0.85[ASN][1000 genomes]
rs7081448	0.86[ASN][1000 genomes]
rs72634995	0.86[ASN][1000 genomes]
rs7904560	0.83[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs9419730	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92648400-92684400	Weak transcription	Aorta	Aorta
2	chr10:92648600-92679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:92648600-92681000	Weak transcription	Pancreas	Pancrea
4	chr10:92652400-92679400	Weak transcription	Psoas Muscle	Psoas
5	chr10:92656400-92678400	Weak transcription	NHDF-Ad	bronchial
6	chr10:92661000-92680000	Weak transcription	Placenta	Placenta
7	chr10:92663400-92679600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:92668400-92678600	Enhancers	Dnd41	blood
9	chr10:92672400-92679800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:92672800-92679800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:92672800-92689000	Weak transcription	Fetal Thymus	thymus
12	chr10:92674600-92680200	Transcr. at gene 5' and 3'	HUVEC	blood vessel
13	chr10:92675000-92680400	Transcr. at gene 5' and 3'	HSMM	muscle
14	chr10:92675400-92680000	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
15	chr10:92675600-92680400	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:92675800-92679200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:92675800-92679400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:92675800-92679800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:92676000-92678200	Transcr. at gene 5' and 3'	Fetal Heart	heart
20	chr10:92676200-92678600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:92676200-92679000	Transcr. at gene 5' and 3'	HSMMtube	muscle
22	chr10:92676400-92679800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:92676600-92678400	Enhancers	Fetal Muscle Leg	muscle
24	chr10:92676600-92678600	Transcr. at gene 5' and 3'	Left Ventricle	heart
25	chr10:92676800-92680800	Active TSS	Right Ventricle	heart
26	chr10:92677200-92679800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:92677200-92681000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr10:92677400-92678200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:92677400-92678600	Enhancers	Fetal Lung	lung
30	chr10:92677400-92680800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:92677400-92680800	Active TSS	Right Atrium	heart
32	chr10:92677600-92678200	Genic enhancers	A549	lung
33	chr10:92677600-92678200	Enhancers	Hela-S3	cervix
34	chr10:92677600-92678600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr10:92677600-92679600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:92677800-92678200	Genic enhancers	Osteobl	bone
37	chr10:92677800-92678600	Enhancers	GM12878-XiMat	blood
38	chr10:92678000-92678600	Transcr. at gene 5' and 3'	NH-A	brain
39	chr10:92678000-92679200	Enhancers	HepG2	liver

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