Variant report

Variant	rs10881894
Chromosome Location	chr10:92928027-92928028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92922072..92923985-chr10:92926034..92928269,2	MCF-7	breast:
2	chr10:92927463..92929607-chr10:92933757..92936715,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PCGF5-2	chr10:92927623-92928055	NONHSAT015622

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10881897	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11186488	0.90[EUR][1000 genomes]
rs12218128	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12218424	0.81[CHB][hapmap]
rs12218813	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12767896	0.80[AFR][1000 genomes]
rs59619411	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7096527	0.90[EUR][1000 genomes]
rs7920283	1.00[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757405	chr10:92901100-92932937	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759776	chr10:92901100-92932937	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv442203	chr10:92925199-92933095	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92924200-92928400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr10:92924200-92931200	Weak transcription	Left Ventricle	heart
3	chr10:92924200-92931200	Weak transcription	Lung	lung
4	chr10:92924200-92931200	Weak transcription	Right Atrium	heart
5	chr10:92924200-92937200	Weak transcription	Primary B cells from cord blood	blood
6	chr10:92924600-92934800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr10:92924600-92937200	Weak transcription	Fetal Thymus	thymus
8	chr10:92924800-92928200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:92924800-92929200	Weak transcription	Primary T cells from cord blood	blood
10	chr10:92924800-92944400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:92924800-92944600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:92924800-92944600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:92924800-92945200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:92925400-92928200	Weak transcription	Spleen	Spleen
15	chr10:92925400-92934600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr10:92925400-92944200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr10:92926000-92929600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr10:92926000-92943800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr10:92926200-92930400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:92926400-92930800	Weak transcription	Liver	Liver
21	chr10:92926400-92938600	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr10:92926600-92930600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:92926600-92930800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:92926600-92931800	Weak transcription	Right Ventricle	heart
25	chr10:92926600-92932200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr10:92926600-92944600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr10:92926800-92932000	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr10:92926800-92945200	Weak transcription	Fetal Heart	heart
29	chr10:92927200-92928400	Genic enhancers	Dnd41	blood
30	chr10:92927800-92929800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:92928000-92928400	Enhancers	Aorta	Aorta
32	chr10:92928000-92928600	Enhancers	Psoas Muscle	Psoas
33	chr10:92928000-92934600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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