Variant report

Variant	rs10881936
Chromosome Location	chr10:93402670-93402671
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10786007	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10881937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881944	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10881946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186651	0.83[ASN][1000 genomes]
rs11186654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2421620	0.85[ASN][1000 genomes]
rs2421622	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2421634	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3980673	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4933217	0.85[ASN][1000 genomes]
rs4933686	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7068110	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7094024	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7098204	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7475251	0.93[ASN][1000 genomes]
rs7901243	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7923923	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93393400-93403600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:93393600-93402800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:93395800-93402800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:93401600-93403400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:93401600-93404800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr10:93401800-93402800	Weak transcription	Liver	Liver
7	chr10:93401800-93404800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:93402000-93404800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:93402200-93403600	Enhancers	HSMM	muscle
10	chr10:93402200-93403600	Enhancers	NHDF-Ad	bronchial
11	chr10:93402200-93403800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:93402200-93404000	Enhancers	HMEC	breast
13	chr10:93402400-93403400	Weak transcription	Aorta	Aorta
14	chr10:93402400-93403600	Enhancers	NHEK	skin
15	chr10:93402400-93403800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:93402400-93404000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:93402400-93404000	Enhancers	Osteobl	bone
18	chr10:93402600-93404000	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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