Variant report

Variant	rs10882822
Chromosome Location	chr10:98323591-98323592
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10128106	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1018604	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1018605	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10882811	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10882813	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10882817	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11188827	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1324259	0.85[AMR][1000 genomes]
rs2025451	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2031329	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2861555	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3789957	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs3818389	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4919029	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4919032	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4919037	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7097291	0.82[AMR][1000 genomes]
rs7448	0.81[AMR][1000 genomes]
rs7919739	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9633703	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10882822	NPM1P26	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98274200-98328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:98274200-98328600	Weak transcription	Pancreas	Pancrea
3	chr10:98274200-98331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:98276400-98343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:98277800-98330400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:98286600-98338400	Weak transcription	Aorta	Aorta
7	chr10:98286600-98339400	Weak transcription	Brain Angular Gyrus	brain
8	chr10:98286600-98345600	Weak transcription	Esophagus	oesophagus
9	chr10:98290000-98344200	Weak transcription	Spleen	Spleen
10	chr10:98292600-98344800	Weak transcription	Brain Germinal Matrix	brain
11	chr10:98293600-98326200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:98297000-98329200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr10:98297200-98325000	Strong transcription	Placenta	Placenta
14	chr10:98297800-98324800	Strong transcription	Dnd41	blood
15	chr10:98298400-98324600	Strong transcription	Primary B cells from cord blood	blood
16	chr10:98298600-98324600	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr10:98298600-98325000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:98298600-98325200	Strong transcription	Primary B cells from peripheral blood	blood
19	chr10:98298800-98324200	Strong transcription	Fetal Thymus	thymus
20	chr10:98298800-98325600	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr10:98299000-98325200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr10:98299400-98324200	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr10:98304400-98325600	Weak transcription	NHLF	lung
24	chr10:98305400-98325000	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr10:98305800-98325000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:98307400-98331200	Weak transcription	Fetal Brain Male	brain
27	chr10:98307600-98328200	Weak transcription	Brain Hippocampus Middle	brain
28	chr10:98307600-98328600	Weak transcription	Right Ventricle	heart
29	chr10:98307800-98328600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr10:98307800-98331000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr10:98307800-98341600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:98308000-98325600	Weak transcription	Brain Anterior Caudate	brain
33	chr10:98308000-98330800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr10:98310400-98328400	Weak transcription	Fetal Brain Female	brain
35	chr10:98312800-98324600	Strong transcription	Primary T cells from cord blood	blood
36	chr10:98313800-98328800	Weak transcription	Gastric	stomach
37	chr10:98314400-98345600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:98315000-98324600	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr10:98316000-98324200	Strong transcription	Fetal Muscle Leg	muscle
40	chr10:98316400-98324200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr10:98316600-98324200	Strong transcription	Fetal Muscle Trunk	muscle
42	chr10:98316800-98324800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr10:98317000-98324600	Strong transcription	NH-A	brain
44	chr10:98317000-98333400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:98317200-98324200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:98317200-98324800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr10:98317400-98324200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:98317400-98324400	Strong transcription	Adipose Nuclei	Adipose
49	chr10:98317400-98325200	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr10:98317400-98327400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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