Variant report

Variant	rs10882948
Chromosome Location	chr10:99266821-99266822
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99255192..99260643-chr10:99260836..99267100,8	K562	blood:
2	chr10:99264711..99267352-chr10:99330266..99332362,2	MCF-7	breast:
3	chr10:99265449..99267822-chr10:99277534..99279101,2	K562	blood:
4	chr10:99266125..99268587-chr10:99272459..99275467,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155229	Chromatin interaction
ENSG00000165887	Chromatin interaction
ENSG00000165886	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11189245	0.99[ASN][1000 genomes]
rs17112841	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2211243	0.81[ASN][1000 genomes]
rs4919104	0.82[EUR][1000 genomes]
rs7068965	0.81[ASN][1000 genomes]
rs7096611	0.96[ASN][1000 genomes]
rs7915501	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99260200-99276800	Weak transcription	Pancreas	Pancrea
2	chr10:99260400-99269400	Weak transcription	Ovary	ovary
3	chr10:99260400-99271400	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:99260400-99272000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:99260600-99267600	Weak transcription	Brain Anterior Caudate	brain
6	chr10:99260600-99267800	Weak transcription	Osteobl	bone
7	chr10:99260600-99268000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:99260600-99268000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:99260600-99268000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:99260600-99268200	Weak transcription	NH-A	brain
11	chr10:99260600-99270800	Weak transcription	Brain Angular Gyrus	brain
12	chr10:99260600-99271200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:99260800-99267600	Weak transcription	Brain Substantia Nigra	brain
14	chr10:99260800-99267800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:99260800-99267800	Weak transcription	HMEC	breast
16	chr10:99260800-99268000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:99260800-99268000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:99260800-99268000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:99260800-99270400	Weak transcription	Adipose Nuclei	Adipose
20	chr10:99260800-99276800	Weak transcription	HSMM	muscle
21	chr10:99261000-99267800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:99261000-99267800	Weak transcription	NHLF	lung
23	chr10:99261000-99270800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:99261600-99267600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:99262000-99271600	Weak transcription	HepG2	liver
26	chr10:99262400-99267800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:99263400-99267600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:99263400-99271600	Weak transcription	Lung	lung
29	chr10:99263600-99270800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:99263600-99277800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr10:99263800-99277200	Weak transcription	HSMMtube	muscle
32	chr10:99263800-99277600	Weak transcription	Aorta	Aorta
33	chr10:99264000-99271200	Weak transcription	Right Atrium	heart
34	chr10:99264000-99271600	Weak transcription	Fetal Muscle Leg	muscle
35	chr10:99264000-99271600	Weak transcription	Right Ventricle	heart
36	chr10:99264200-99267800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:99264200-99268000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr10:99264200-99271200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr10:99264600-99267600	Weak transcription	Brain Hippocampus Middle	brain
40	chr10:99265000-99267600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr10:99265200-99267600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr10:99265600-99267600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr10:99266200-99267600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:99266200-99267600	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:99266200-99267600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr10:99266200-99267800	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr10:99266200-99270800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr10:99266200-99271200	Weak transcription	Left Ventricle	heart
49	chr10:99266200-99271800	Weak transcription	Fetal Muscle Trunk	muscle
50	chr10:99266200-99272200	Weak transcription	Psoas Muscle	Psoas

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