Variant report

Variant	rs10885072
Chromosome Location	chr10:112739135-112739136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10787294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885067	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10885070	0.85[AMR][1000 genomes]
rs10885074	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885077	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1327551	0.92[AFR][1000 genomes]
rs4335469	0.81[AMR][1000 genomes]
rs4597005	0.81[AMR][1000 genomes]
rs7901832	0.81[AMR][1000 genomes]
rs9703807	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035602	chr10:112636053-112781413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1051327	chr10:112650316-112772917	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv540774	chr10:112650316-112772917	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv831985	chr10:112652089-112803103	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1048809	chr10:112683822-112781413	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1042020	chr10:112686323-112795159	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv1035422	chr10:112724159-112764594	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1048444	chr10:112724159-112795159	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv1036202	chr10:112726834-112781413	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv1051595	chr10:112730022-112789048	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112697200-112740200	Weak transcription	Thymus	Thymus
2	chr10:112697200-112745400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:112700600-112764000	Weak transcription	Placenta	Placenta
4	chr10:112702400-112754800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:112705200-112789800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:112707200-112755000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:112707200-112784200	Weak transcription	Left Ventricle	heart
8	chr10:112709000-112760000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr10:112712600-112751200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:112712600-112755000	Weak transcription	Fetal Thymus	thymus
11	chr10:112712800-112751600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:112719400-112760800	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:112719800-112759200	Weak transcription	Fetal Lung	lung
14	chr10:112723200-112783000	Weak transcription	Small Intestine	intestine
15	chr10:112724600-112748600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:112724800-112739600	Weak transcription	Aorta	Aorta
17	chr10:112724800-112746600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr10:112724800-112760200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr10:112726600-112764000	Weak transcription	HUVEC	blood vessel
20	chr10:112727200-112740600	Weak transcription	Dnd41	blood
21	chr10:112727400-112745400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:112727400-112764400	Weak transcription	Adipose Nuclei	Adipose
23	chr10:112727600-112748800	Weak transcription	NHDF-Ad	bronchial
24	chr10:112727800-112739400	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr10:112728200-112748400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:112731000-112739200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr10:112731400-112740200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr10:112732400-112763800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr10:112732600-112748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr10:112732600-112789400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:112732800-112739200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:112732800-112740400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:112732800-112740400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr10:112732800-112746200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr10:112732800-112746200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:112732800-112746600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:112732800-112755000	Weak transcription	Fetal Intestine Large	intestine
38	chr10:112732800-112782800	Weak transcription	Esophagus	oesophagus
39	chr10:112732800-112789400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr10:112733000-112740800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr10:112733000-112741000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr10:112734000-112741400	ZNF genes & repeats	GM12878-XiMat	blood
43	chr10:112736200-112739600	Strong transcription	Primary B cells from peripheral blood	blood
44	chr10:112736400-112746400	Weak transcription	Fetal Stomach	stomach
45	chr10:112736400-112752000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr10:112737000-112739200	Enhancers	Liver	Liver
47	chr10:112737600-112739200	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr10:112737600-112740000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:112737600-112740000	Strong transcription	Primary B cells from cord blood	blood
50	chr10:112737600-112741400	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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