Variant report

Variant	rs10885090
Chromosome Location	chr10:112890917-112890918
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10437458	0.84[AMR][1000 genomes]
rs10885091	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1335703	0.92[ASN][1000 genomes]
rs7922937	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112887400-112891200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr10:112887800-112891200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr10:112887800-112891200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr10:112888200-112891400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr10:112888200-112891600	Enhancers	Stomach Mucosa	stomach
6	chr10:112888600-112891400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:112888800-112891400	Enhancers	Fetal Intestine Small	intestine
8	chr10:112889200-112891400	Enhancers	Pancreas	Pancrea
9	chr10:112889200-112895200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:112889800-112897400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:112890000-112891200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:112890200-112891400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr10:112890400-112891000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr10:112890400-112891400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr10:112890400-112895800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:112890600-112891400	Enhancers	Duodenum Mucosa	Duodenum
17	chr10:112890800-112891200	Enhancers	Liver	Liver
18	chr10:112890800-112895800	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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