Variant report

Variant	rs10885868
Chromosome Location	chr10:117922112-117922113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10749191	0.85[MKK][hapmap]
rs12267789	0.87[AMR][1000 genomes]
rs4751955	0.84[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10885868	RGS10	cis	parietal	SCAN
rs10885868	GFRA1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117915600-117924200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:117917600-117922600	Weak transcription	Brain Anterior Caudate	brain
3	chr10:117918400-117923200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:117921800-117923600	Enhancers	Pancreas	Pancrea
5	chr10:117922000-117922200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:117922000-117923600	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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