Variant report

Variant	rs10885886
Chromosome Location	chr10:118004532-118004533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10885887	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117995800-118007000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:117999800-118011200	Weak transcription	Liver	Liver
3	chr10:118000000-118007000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:118001200-118006600	Weak transcription	HSMMtube	muscle
5	chr10:118001400-118004800	Weak transcription	Fetal Brain Female	brain
6	chr10:118001800-118007000	Weak transcription	Fetal Stomach	stomach
7	chr10:118002000-118007400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:118002200-118007000	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:118003600-118011200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:118004200-118004800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:118004200-118005000	Enhancers	Fetal Brain Male	brain
12	chr10:118004200-118005000	Enhancers	HSMM	muscle
13	chr10:118004400-118007200	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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