Variant report

Variant	rs10887889
Chromosome Location	chr10:90792979-90792980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90790531..90793137-chr10:90969474..90972044,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAS-2	chr10:90787438-90793194	NONHSAT015495

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12570042	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90771800-90808600	Weak transcription	Primary T cells from cord blood	blood
2	chr10:90772400-90795000	Weak transcription	Placenta	Placenta
3	chr10:90772600-90795800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:90780800-90804200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr10:90789400-90793000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr10:90789400-90793000	Enhancers	Osteobl	bone
7	chr10:90789800-90793000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr10:90789800-90802000	Weak transcription	Ovary	ovary
9	chr10:90790000-90802800	Weak transcription	Fetal Intestine Small	intestine
10	chr10:90791200-90793000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:90791200-90793200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:90791600-90793000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:90791600-90793000	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr10:90791800-90793000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:90792000-90793800	Weak transcription	Left Ventricle	heart
16	chr10:90792000-90801800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:90792200-90807200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr10:90792400-90793000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr10:90792400-90793200	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr10:90792600-90793000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:90792600-90793200	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr10:90792600-90793200	Enhancers	HUVEC	blood vessel
23	chr10:90792600-90795000	Weak transcription	Adipose Nuclei	Adipose
24	chr10:90792800-90793000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:90792800-90793200	Enhancers	Hela-S3	cervix
26	chr10:90792800-90793200	Enhancers	HMEC	breast
27	chr10:90792800-90793200	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr10:90792800-90793200	Enhancers	NHEK	skin
29	chr10:90792800-90793400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:90792800-90793800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr10:90792800-90793800	Weak transcription	Right Ventricle	heart
32	chr10:90792800-90794600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr10:90792800-90794800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:90792800-90795000	Weak transcription	Right Atrium	heart
35	chr10:90792800-90795000	Weak transcription	NHDF-Ad	bronchial
36	chr10:90792800-90795600	Weak transcription	NHLF	lung
37	chr10:90792800-90796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:90792800-90801600	Weak transcription	Esophagus	oesophagus
39	chr10:90792800-90801800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:90792800-90801800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:90792800-90807200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr10:90792800-90807400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:90792800-90814600	Weak transcription	GM12878-XiMat	blood

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