Variant report

Variant	rs10887935
Chromosome Location	chr10:91012336-91012337
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90610616..90613278-chr10:91010263..91012632,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152766	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1051339	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11203048	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11203053	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267584	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2863757	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2902561	0.97[ASN][1000 genomes]
rs2902563	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3740044	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4536120	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs928415	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
6	nsv895882	chr10:91002927-91021645	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91010200-91012400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr10:91011000-91012400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:91011400-91012400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:91011400-91012400	Active TSS	Stomach Smooth Muscle	stomach
5	chr10:91011400-91021600	Weak transcription	Fetal Brain Male	brain
6	chr10:91011800-91012600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:91011800-91012600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:91011800-91013600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:91011800-91020400	Weak transcription	Stomach Mucosa	stomach
10	chr10:91012000-91012400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:91012000-91012400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr10:91012000-91012400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:91012000-91012400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr10:91012000-91012400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:91012000-91012400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:91012000-91012400	Enhancers	Fetal Muscle Leg	muscle
17	chr10:91012000-91012400	Enhancers	Ovary	ovary
18	chr10:91012000-91012400	Flanking Active TSS	Dnd41	blood
19	chr10:91012000-91012600	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr10:91012000-91012600	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr10:91012000-91013800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:91012000-91013800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr10:91012000-91015400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:91012000-91015800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:91012000-91020400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:91012000-91021800	Weak transcription	Right Atrium	heart
27	chr10:91012200-91012400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr10:91012200-91012400	Enhancers	Primary B cells from peripheral blood	blood
29	chr10:91012200-91012400	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr10:91012200-91012400	Enhancers	Brain Substantia Nigra	brain
31	chr10:91012200-91012400	Enhancers	Duodenum Mucosa	Duodenum
32	chr10:91012200-91012400	Enhancers	Lung	lung
33	chr10:91012200-91012600	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr10:91012200-91012600	Enhancers	Primary T cells fromperipheralblood	blood
35	chr10:91012200-91015600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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