Variant report

Variant	rs10888168
Chromosome Location	chr8:19611230-19611231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10103941	0.96[EUR][1000 genomes]
rs10105057	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11204069	0.86[EUR][1000 genomes]
rs11784896	0.84[EUR][1000 genomes]
rs1492635	0.95[EUR][1000 genomes]
rs1552780	0.84[EUR][1000 genomes]
rs4921675	0.89[EUR][1000 genomes]
rs6586863	0.84[EUR][1000 genomes]
rs6995621	0.96[EUR][1000 genomes]
rs7011829	0.86[EUR][1000 genomes]
rs7012125	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949636	chr8:18957705-19664732	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv949304	chr8:19199688-19625912	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv1021575	chr8:19430653-19623452	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1021731	chr8:19515149-19643313	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19588600-19613400	Weak transcription	Pancreas	Pancrea
2	chr8:19603800-19613800	Weak transcription	Ovary	ovary
3	chr8:19604600-19614000	Weak transcription	Aorta	Aorta
4	chr8:19604800-19614000	Weak transcription	Spleen	Spleen
5	chr8:19605000-19612000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr8:19605400-19612400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr8:19607400-19612400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr8:19608000-19612200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:19608000-19613400	Weak transcription	Left Ventricle	heart
10	chr8:19608800-19611600	Weak transcription	Fetal Brain Male	brain
11	chr8:19609400-19613200	Weak transcription	Placenta	Placenta
12	chr8:19609400-19613400	Weak transcription	Gastric	stomach
13	chr8:19609400-19613400	Weak transcription	Right Ventricle	heart
14	chr8:19609800-19613200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr8:19609800-19613200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr8:19609800-19613400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr8:19610000-19613000	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr8:19610000-19613200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr8:19610000-19613400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr8:19610000-19613400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr8:19610000-19613400	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr8:19610800-19611600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr8:19610800-19612000	Enhancers	Primary T cells from cord blood	blood
24	chr8:19610800-19612000	Weak transcription	Hela-S3	cervix
25	chr8:19610800-19613000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:19610800-19613200	Weak transcription	Right Atrium	heart
27	chr8:19610800-19613800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr8:19610800-19613800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr8:19611000-19612000	Enhancers	A549	lung
30	chr8:19611200-19612400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr8:19611200-19612600	Enhancers	Primary B cells from cord blood	blood

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