Variant report

Variant	rs10888479
Chromosome Location	chr1:149782409-149782410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:149780176..149786781-chr1:149856138..149862217,21	MCF-7	breast:
2	chr1:149780176..149782489-chr1:149856785..149858903,2	MCF-7	breast:
3	chr1:149780184..149786348-chr1:149813638..149819174,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000220323	Chromatin interaction
ENSG00000183558	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000272993	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1376676	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432820	chr1:148921404-149920927	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	784 gene(s)	inside rSNPs	diseases
2	nsv869912	chr1:148936712-149815117	Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	413 gene(s)	inside rSNPs	diseases
3	esv1809518	chr1:149004461-149787386	Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	406 gene(s)	inside rSNPs	diseases
4	esv1806395	chr1:149015282-149849940	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	425 gene(s)	inside rSNPs	diseases
5	esv1831586	chr1:149036382-149849940	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	425 gene(s)	inside rSNPs	diseases
6	esv1827746	chr1:149038756-149797917	Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	405 gene(s)	inside rSNPs	diseases
7	nsv872384	chr1:149211496-149815536	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	406 gene(s)	inside rSNPs	diseases
8	nsv824553	chr1:149581035-149782803	Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv824564	chr1:149581035-149815116	Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
10	esv18080	chr1:149622963-149801822	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
11	nsv831503	chr1:149640643-149820841	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
12	nsv469694	chr1:149688852-149836280	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
13	nsv482790	chr1:149688852-149836280	Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
14	nsv831525	chr1:149701537-149878033	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	424 gene(s)	inside rSNPs	diseases
15	esv18420	chr1:149707658-149795271	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
16	nsv946376	chr1:149729856-149783106	Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149777600-149782600	Weak transcription	Pancreas	Pancrea
2	chr1:149781600-149785000	Active TSS	K562	blood
3	chr1:149781600-149785600	Active TSS	A549	lung
4	chr1:149782000-149782800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr1:149782200-149782600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr1:149782200-149782600	Enhancers	Brain Hippocampus Middle	brain
7	chr1:149782200-149782600	Enhancers	Fetal Heart	heart
8	chr1:149782200-149782800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:149782200-149782800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr1:149782200-149782800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
11	chr1:149782200-149782800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:149782200-149782800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:149782200-149782800	Enhancers	Brain Angular Gyrus	brain
14	chr1:149782200-149782800	Enhancers	Spleen	Spleen
15	chr1:149782200-149782800	Flanking Active TSS	Hela-S3	cervix
16	chr1:149782200-149783000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr1:149782200-149783000	Enhancers	Primary T cells fromperipheralblood	blood
18	chr1:149782200-149783000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr1:149782200-149783000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:149782200-149783000	Enhancers	Fetal Lung	lung
21	chr1:149782200-149783000	Flanking Active TSS	Fetal Thymus	thymus
22	chr1:149782200-149783200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:149782200-149783200	Enhancers	Liver	Liver
24	chr1:149782200-149783400	Flanking Active TSS	Dnd41	blood
25	chr1:149782200-149785000	Active TSS	Ovary	ovary
26	chr1:149782200-149785200	Active TSS	Fetal Brain Female	brain
27	chr1:149782200-149785400	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr1:149782200-149785400	Active TSS	H1 Cell Line	embryonic stem cell
29	chr1:149782200-149785400	Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr1:149782200-149785400	Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr1:149782200-149785400	Active TSS	Brain Germinal Matrix	brain
32	chr1:149782200-149785400	Active TSS	Thymus	Thymus
33	chr1:149782400-149782600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
34	chr1:149782400-149782600	Enhancers	Primary T cells from cord blood	blood
35	chr1:149782400-149782600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr1:149782400-149782600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr1:149782400-149782600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr1:149782400-149782600	Enhancers	Brain Substantia Nigra	brain
39	chr1:149782400-149782600	Flanking Active TSS	Fetal Intestine Large	intestine
40	chr1:149782400-149782800	Flanking Active TSS	Primary B cells from cord blood	blood
41	chr1:149782400-149782800	Flanking Active TSS	Primary B cells from peripheral blood	blood
42	chr1:149782400-149782800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr1:149782400-149782800	Enhancers	HMEC	breast
44	chr1:149782400-149782800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr1:149782400-149783000	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr1:149782400-149783000	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr1:149782400-149783000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr1:149782400-149783000	Enhancers	Fetal Brain Male	brain
49	chr1:149782400-149783000	Enhancers	NHEK	skin
50	chr1:149782400-149783200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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