Variant report
Variant | rs10888515 |
---|---|
Chromosome Location | chr1:152719487-152719488 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1034109 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
rs10788848 | 0.96[CEU][hapmap];0.82[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs10888516 | 0.82[EUR][1000 genomes] |
rs11205099 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs11205101 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs11205102 | 1.00[CEU][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs11205103 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs11576947 | 0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs11583485 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs12023710 | 0.87[ASN][1000 genomes] |
rs12045361 | 0.82[CHB][hapmap] |
rs12057226 | 0.96[CEU][hapmap] |
rs12077214 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs1332504 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1332505 | 0.82[CHB][hapmap];0.85[ASN][1000 genomes] |
rs1332506 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1412550 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs16834421 | 0.84[CHD][hapmap];0.80[ASN][1000 genomes] |
rs16834461 | 0.90[CHD][hapmap];0.85[ASN][1000 genomes] |
rs16834495 | 0.80[ASN][1000 genomes] |
rs1831641 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs1888962 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1953057 | 0.92[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.85[TSI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1987751 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs1987752 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs2010006 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2065206 | 0.82[ASN][1000 genomes] |
rs2297487 | 0.90[CHD][hapmap];0.83[ASN][1000 genomes] |
rs2339382 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs28464852 | 0.91[EUR][1000 genomes] |
rs4329520 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs4845321 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs4845322 | 1.00[CEU][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs4845323 | 0.82[CHB][hapmap] |
rs4845475 | 0.85[ASN][1000 genomes] |
rs4845476 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs4845477 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs4845478 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs4845479 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs4845480 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs4845481 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs4845488 | 0.88[CEU][hapmap] |
rs6587702 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6587703 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6673149 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs6680648 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs6689049 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];0.87[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs6698773 | 0.84[ASN][1000 genomes] |
rs7515777 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.87[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs7515795 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs7530000 | 1.00[CEU][hapmap];0.80[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs872180 | 0.80[ASN][1000 genomes] |
rs882827 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs913997 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs913998 | 0.80[ASN][1000 genomes] |
rs913999 | 0.80[ASN][1000 genomes] |
rs944683 | 0.90[CHD][hapmap];0.85[ASN][1000 genomes] |
rs950338 | 1.00[CEU][hapmap];0.80[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs9729955 | 0.91[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2757755 | chr1:152472839-152898153 | Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
2 | esv2758970 | chr1:152472839-152898153 | ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
3 | esv33483 | chr1:152550269-152775526 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
4 | nsv547891 | chr1:152556085-152770446 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
5 | nsv427786 | chr1:152572990-152898153 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
6 | nsv1013433 | chr1:152619305-153262215 | Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
7 | nsv535170 | chr1:152619305-153262215 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
8 | nsv1001834 | chr1:152648853-153279143 | Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 44 gene(s) | inside rSNPs | diseases |
9 | nsv428521 | chr1:152663153-152831578 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
10 | esv3692902 | chr1:152669367-152732567 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
11 | nsv947325 | chr1:152670204-152793272 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
12 | esv34854 | chr1:152671913-152756806 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
13 | nsv818478 | chr1:152672005-152734796 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
14 | nsv547899 | chr1:152672005-153245082 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
15 | esv2756865 | chr1:152682708-152739226 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
16 | esv2763813 | chr1:152687058-152780522 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
17 | nsv1000648 | chr1:152719318-152747126 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:152714600-152721200 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
2 | chr1:152715800-152720400 | Enhancers | NHDF-Ad | bronchial |
3 | chr1:152718400-152724600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
4 | chr1:152718400-152724600 | Weak transcription | Muscle Satellite Cultured Cells | -- |
5 | chr1:152718600-152720200 | Weak transcription | HMEC | breast |
6 | chr1:152718600-152720200 | Weak transcription | NHEK | skin |
7 | chr1:152719200-152725000 | Weak transcription | NHLF | lung |