Variant report

Variant	rs10888967
Chromosome Location	chr1:56804073-56804074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11206794	0.89[ASN][1000 genomes]
rs11206795	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11206798	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12120105	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12123862	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12135708	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12143053	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12561840	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12562353	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12563015	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12566944	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12567196	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12567652	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28784046	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35691565	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4279887	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4397689	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4421626	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4462192	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4477326	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4564188	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4912223	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4912230	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4912409	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4912412	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4912413	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61772736	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6588619	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6588622	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6588623	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6680675	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6684867	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7515200	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7518559	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7526379	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7527370	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7529732	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7529741	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7542209	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7542690	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7550046	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1015037	chr1:56784322-56814739	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56787000-56805600	Weak transcription	Left Ventricle	heart
2	chr1:56791200-56820800	Weak transcription	Aorta	Aorta
3	chr1:56797800-56805600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:56798400-56807800	Weak transcription	Fetal Intestine Small	intestine
5	chr1:56799200-56804200	Enhancers	Placenta	Placenta
6	chr1:56800000-56805600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:56801800-56805000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr1:56801800-56805600	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:56801800-56805600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr1:56802400-56805000	Weak transcription	Pancreas	Pancrea
11	chr1:56802400-56805000	Weak transcription	Psoas Muscle	Psoas
12	chr1:56802400-56805200	Enhancers	NHDF-Ad	bronchial
13	chr1:56803600-56804800	Weak transcription	NHLF	lung
14	chr1:56803600-56805000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:56803600-56805200	Enhancers	HepG2	liver

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