Variant report

Variant	rs10890102
Chromosome Location	chr1:74470568-74470569
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10047208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1032084	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10749828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10749829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10890106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10890107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10890114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11210402	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11210406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11210414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11210415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11210429	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12021625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12143930	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12742029	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12742202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12753370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1333032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1340472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1483782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1483785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1483786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1483788	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17094802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1934729	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1984228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35254383	0.92[ASN][1000 genomes]
rs4649995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4650246	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4650248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs471496	0.92[ASN][1000 genomes]
rs505634	0.92[ASN][1000 genomes]
rs525358	0.92[ASN][1000 genomes]
rs532396	0.92[ASN][1000 genomes]
rs55793584	0.85[ASN][1000 genomes]
rs573721	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs575754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs575961	0.92[ASN][1000 genomes]
rs6424572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6424575	0.92[ASN][1000 genomes]
rs6658083	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6661309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6669321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs6672037	0.92[ASN][1000 genomes]
rs6673549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs71655424	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7524306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7535276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7538410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7542912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9425024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs982792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004451	chr1:74107125-74874389	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv534999	chr1:74107125-74874389	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv522147	chr1:74338530-74983835	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1003171	chr1:74407468-75122270	Strong transcription Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv535000	chr1:74407468-75122270	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1013244	chr1:74441655-74680703	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv535001	chr1:74441655-74680703	Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv470717	chr1:74445584-74532587	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:74469600-74470600	Enhancers	Fetal Heart	heart
2	chr1:74469800-74471200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:74470200-74470600	Enhancers	Fetal Stomach	stomach
4	chr1:74470200-74471400	Enhancers	HUES6 Cell Line	embryonic stem cell

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