Variant report

Variant	rs10890136
Chromosome Location	chr1:75045729-75045730
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr1:75045503-75045763	HepG2	liver:	n/a	chr1:75045674-75045685 chr1:75045674-75045685 chr1:75045590-75045604 chr1:75045591-75045602 chr1:75045591-75045602

Variant related genes	Relation type
C1orf173	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10493546	0.81[CEU][hapmap];0.88[GIH][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes]
rs10789398	0.91[EUR][1000 genomes]
rs10890133	0.91[EUR][1000 genomes]
rs10890137	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.89[TSI][hapmap]
rs11210488	0.93[EUR][1000 genomes]
rs11210489	0.81[GIH][hapmap]
rs12029405	0.94[EUR][1000 genomes]
rs12074297	0.91[EUR][1000 genomes]
rs12117493	0.81[GIH][hapmap]
rs1340987	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1378278	0.81[GIH][hapmap]
rs1424667	0.81[GIH][hapmap]
rs17548925	0.90[EUR][1000 genomes]
rs1834189	0.81[GIH][hapmap]
rs3845350	0.89[EUR][1000 genomes]
rs3845355	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.89[TSI][hapmap]
rs4123382	1.00[CHB][hapmap]
rs4650002	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6660278	0.81[GIH][hapmap]
rs6671066	0.81[GIH][hapmap]
rs6701034	0.84[CEU][hapmap]
rs72675359	0.94[EUR][1000 genomes]
rs72675360	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9326117	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9661462	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003171	chr1:74407468-75122270	Strong transcription Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv535000	chr1:74407468-75122270	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1011745	chr1:74730942-75477618	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv535003	chr1:74730942-75477618	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv830248	chr1:74962391-75144458	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv870824	chr1:75019390-75125581	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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