Variant report

Variant	rs10890482
Chromosome Location	chr1:47946433-47946434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10157710	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10158500	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10789510	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11211539	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1337526	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2065944	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4430377	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6588401	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6588402	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6588403	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6658691	0.90[ASN][1000 genomes]
rs6676159	0.90[ASN][1000 genomes]
rs6699230	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7532110	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001779	chr1:47884229-48111485	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv871299	chr1:47889417-48057890	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv2755190	chr1:47907580-48048680	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47934400-47950600	Weak transcription	Right Atrium	heart
2	chr1:47942000-47946800	Enhancers	Liver	Liver
3	chr1:47944000-47948400	Weak transcription	Lung	lung
4	chr1:47944200-47946800	Enhancers	Stomach Mucosa	stomach
5	chr1:47944400-47948600	Weak transcription	Adipose Nuclei	Adipose
6	chr1:47944600-47947800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:47945600-47947200	Weak transcription	Colonic Mucosa	Colon
8	chr1:47945800-47948000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:47946000-47946800	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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