Variant report
| Variant | rs10890487 |
|---|---|
| Chromosome Location | chr1:47979922-47979923 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10158498 | 0.89[ASN][1000 genomes] |
| rs10749868 | 0.88[ASN][1000 genomes] |
| rs10890483 | 0.90[ASN][1000 genomes] |
| rs10890484 | 0.90[ASN][1000 genomes] |
| rs10890485 | 0.90[ASN][1000 genomes] |
| rs12143164 | 0.81[ASN][1000 genomes] |
| rs1337527 | 0.80[ASN][1000 genomes] |
| rs1337528 | 0.91[ASN][1000 genomes] |
| rs1415540 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1415541 | 0.81[ASN][1000 genomes] |
| rs1572547 | 0.87[ASN][1000 genomes] |
| rs1572548 | 0.90[ASN][1000 genomes] |
| rs2065946 | 0.90[ASN][1000 genomes] |
| rs2065947 | 0.90[ASN][1000 genomes] |
| rs2065948 | 0.90[ASN][1000 genomes] |
| rs513464 | 0.81[ASN][1000 genomes] |
| rs518025 | 0.88[ASN][1000 genomes] |
| rs663650 | 0.81[ASN][1000 genomes] |
| rs6693428 | 0.80[ASN][1000 genomes] |
| rs7517146 | 0.80[ASN][1000 genomes] |
| rs7528714 | 0.90[ASN][1000 genomes] |
| rs7537527 | 0.80[ASN][1000 genomes] |
| rs7540974 | 0.89[ASN][1000 genomes] |
| rs7543774 | 0.90[ASN][1000 genomes] |
| rs7544826 | 0.90[ASN][1000 genomes] |
| rs7547288 | 0.90[ASN][1000 genomes] |
| rs7552647 | 0.80[ASN][1000 genomes] |
| rs7555100 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1001779 | chr1:47884229-48111485 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv871299 | chr1:47889417-48057890 | Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | esv2755190 | chr1:47907580-48048680 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:47976000-47989200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
