Variant report

Variant	rs10891542
Chromosome Location	chr11:113253915-113253916
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:113253168..113255024-chr11:113561578..113563387,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1055076	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10891541	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10891543	0.81[ASN][1000 genomes]
rs10891545	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11214592	0.86[ASN][1000 genomes]
rs11214598	0.80[ASN][1000 genomes]
rs1124492	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12224538	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12285457	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2276070	0.83[ASN][1000 genomes]
rs28712705	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3897584	0.81[ASN][1000 genomes]
rs4590907	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4601821	0.81[ASN][1000 genomes]
rs4938010	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4938011	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4938014	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4938016	0.80[ASN][1000 genomes]
rs61492892	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7122228	0.80[ASN][1000 genomes]
rs713233	0.83[ASN][1000 genomes]
rs719803	0.84[ASN][1000 genomes]
rs73557236	0.82[ASN][1000 genomes]
rs7949242	0.90[ASN][1000 genomes]
rs877138	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556444	chr11:113234432-113383394	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10891542	TTC12	cis	multi-tissue	Pritchard
rs10891542	TTC12	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:113232200-113257400	Weak transcription	Small Intestine	intestine
2	chr11:113240200-113258400	Weak transcription	Spleen	Spleen
3	chr11:113240800-113255800	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr11:113241800-113257800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:113244200-113255800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:113244400-113256400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr11:113244600-113254600	Weak transcription	HSMM	muscle
8	chr11:113244800-113257400	Weak transcription	Lung	lung
9	chr11:113245600-113254200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:113249000-113255200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:113249000-113255400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:113249000-113257400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:113249200-113255400	Weak transcription	Placenta	Placenta
14	chr11:113249200-113257600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:113249200-113258200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr11:113249400-113255400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:113249800-113254000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:113249800-113254200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:113250000-113255600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:113251800-113254400	Weak transcription	Aorta	Aorta
21	chr11:113253000-113255600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:113253400-113254600	Weak transcription	HSMMtube	muscle
23	chr11:113253800-113254200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:113253800-113255000	Enhancers	HMEC	breast
25	chr11:113253800-113255600	Enhancers	Fetal Heart	heart

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