Variant report

Variant	rs10892435
Chromosome Location	chr11:119577391-119577392
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr11:119576569-119577438	HL-60	blood:	n/a	chr11:119576947-119576967 chr11:119576947-119576967

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119572643..119574728-chr11:119576925..119579390,2	MCF-7	breast:
2	chr11:119576493..119579043-chr11:119584398..119586423,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255247	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10892439	0.91[YRI][hapmap];0.83[AFR][1000 genomes]
rs11217416	0.96[YRI][hapmap];0.93[AFR][1000 genomes]
rs11604978	0.81[YRI][hapmap]
rs12577411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7104562	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv898422	chr11:119518006-119601779	Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv468880	chr11:119564496-119588062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv556471	chr11:119564496-119588062	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1051769	chr11:119572865-119630769	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119561000-119580600	Weak transcription	Fetal Kidney	kidney
2	chr11:119561800-119577600	Enhancers	Brain Hippocampus Middle	brain
3	chr11:119562000-119578400	Enhancers	Duodenum Mucosa	Duodenum
4	chr11:119563200-119578400	Genic enhancers	Fetal Intestine Small	intestine
5	chr11:119564200-119578400	Enhancers	Fetal Intestine Large	intestine
6	chr11:119565200-119582600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:119567400-119579000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:119568000-119580600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:119568400-119580600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:119568400-119587000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:119568600-119580600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:119568600-119580600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:119568600-119590400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:119570000-119579200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr11:119571800-119579600	Weak transcription	NH-A	brain
16	chr11:119571800-119580000	Weak transcription	Colonic Mucosa	Colon
17	chr11:119572200-119577800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr11:119572600-119592000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:119572800-119577600	Weak transcription	Right Ventricle	heart
20	chr11:119572800-119580000	Weak transcription	Lung	lung
21	chr11:119573000-119577600	Weak transcription	HepG2	liver
22	chr11:119573000-119578000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:119573000-119591800	Weak transcription	Left Ventricle	heart
24	chr11:119573200-119580600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:119573600-119578200	Weak transcription	Adipose Nuclei	Adipose
26	chr11:119573800-119579600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:119574000-119580000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:119574000-119583200	Weak transcription	Placenta	Placenta
29	chr11:119574000-119597200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:119574200-119579600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:119574200-119580000	Weak transcription	HSMM	muscle
32	chr11:119574200-119580200	Weak transcription	Spleen	Spleen
33	chr11:119574400-119579800	Weak transcription	Fetal Muscle Leg	muscle
34	chr11:119574600-119577600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:119574800-119577600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr11:119574800-119580000	Weak transcription	Brain Anterior Caudate	brain
37	chr11:119575200-119577600	Enhancers	Brain Germinal Matrix	brain
38	chr11:119575200-119591600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr11:119575400-119577800	Enhancers	Stomach Mucosa	stomach
40	chr11:119575800-119577800	Enhancers	Fetal Thymus	thymus
41	chr11:119575800-119578000	Enhancers	Small Intestine	intestine
42	chr11:119576000-119578000	Enhancers	Esophagus	oesophagus
43	chr11:119576000-119580600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr11:119576400-119577600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:119576400-119579400	Weak transcription	HMEC	breast
46	chr11:119576400-119580200	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr11:119576600-119577600	Enhancers	Fetal Brain Female	brain
48	chr11:119576600-119578400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr11:119576600-119579800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr11:119576800-119577400	Enhancers	H1 Cell Line	embryonic stem cell

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