Variant report

Variant	rs10892442
Chromosome Location	chr11:119592454-119592455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:119542138..119544074-chr11:119592061..119594692,2	MCF-7	breast:
2	chr11:119590103..119594091-chr11:119595863..119600251,5	MCF-7	breast:
3	chr11:119582343..119585155-chr11:119589653..119593219,3	MCF-7	breast:
4	chr11:119581664..119584119-chr11:119591435..119593140,2	MCF-7	breast:
5	chr11:119591889..119592546-chr11:119599731..119600441,3	K562	blood:

Variant related genes	Relation type
ENSG00000110400	Chromatin interaction
ENSG00000254854	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10790338	0.97[ASN][1000 genomes]
rs10892440	0.97[ASN][1000 genomes]
rs11600071	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12416901	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4245203	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4245204	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4245205	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4533047	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7104562	0.95[ASN][1000 genomes]
rs7104655	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7925057	0.89[ASN][1000 genomes]
rs7927510	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7931978	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv898422	chr11:119518006-119601779	Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv898423	chr11:119541332-119659753	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1051769	chr11:119572865-119630769	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119574000-119597200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:119580800-119597000	Weak transcription	Lung	lung
3	chr11:119582200-119593600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:119585200-119596600	Weak transcription	Primary B cells from cord blood	blood
5	chr11:119586200-119595200	Genic enhancers	Esophagus	oesophagus
6	chr11:119586400-119597600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:119588400-119596800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:119588600-119597400	Weak transcription	NH-A	brain
9	chr11:119589000-119594800	Weak transcription	Brain Germinal Matrix	brain
10	chr11:119589200-119594600	Weak transcription	Fetal Brain Male	brain
11	chr11:119589200-119596800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:119589600-119595600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:119589600-119597400	Weak transcription	Liver	Liver
14	chr11:119590200-119595000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:119590600-119593600	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:119590600-119593600	Enhancers	Fetal Thymus	thymus
17	chr11:119590600-119593800	Enhancers	Brain Cingulate Gyrus	brain
18	chr11:119590600-119594000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:119590800-119592800	Enhancers	HSMMtube	muscle
20	chr11:119591000-119592800	Enhancers	Adipose Nuclei	Adipose
21	chr11:119591200-119592600	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr11:119591200-119593000	Enhancers	NHDF-Ad	bronchial
23	chr11:119591200-119593200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:119591200-119593200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:119591200-119593600	Enhancers	Stomach Mucosa	stomach
26	chr11:119591200-119594200	Weak transcription	Fetal Brain Female	brain
27	chr11:119591200-119595200	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr11:119591200-119595200	Enhancers	Pancreas	Pancrea
29	chr11:119591200-119596400	Enhancers	H1 Cell Line	embryonic stem cell
30	chr11:119591200-119596600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr11:119591400-119592600	Enhancers	Spleen	Spleen
32	chr11:119591400-119593200	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr11:119591400-119594200	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr11:119591400-119595200	Enhancers	Duodenum Mucosa	Duodenum
35	chr11:119591400-119595200	Enhancers	Fetal Muscle Leg	muscle
36	chr11:119591400-119595400	Enhancers	Brain Hippocampus Middle	brain
37	chr11:119591400-119596000	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr11:119591400-119596800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:119591400-119597400	Weak transcription	Right Ventricle	heart
40	chr11:119591600-119592600	Enhancers	HepG2	liver
41	chr11:119591600-119592600	Enhancers	HSMM	muscle
42	chr11:119591600-119592800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:119591600-119592800	Enhancers	Fetal Heart	heart
44	chr11:119591600-119593000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:119591600-119593600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr11:119591600-119593800	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr11:119591600-119593800	Enhancers	Brain Substantia Nigra	brain
48	chr11:119591600-119595000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
49	chr11:119591600-119596000	Enhancers	Brain Angular Gyrus	brain
50	chr11:119591600-119597200	Genic enhancers	Fetal Intestine Small	intestine

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