Variant report

Variant	rs10892627
Chromosome Location	chr11:120700897-120700898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10892629	0.84[EUR][1000 genomes]
rs7123228	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120684000-120707600	Weak transcription	Ovary	ovary
2	chr11:120694600-120703000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:120698400-120701400	Enhancers	Brain Substantia Nigra	brain
4	chr11:120698400-120701800	Enhancers	Brain Hippocampus Middle	brain
5	chr11:120698600-120701400	Enhancers	Brain Cingulate Gyrus	brain
6	chr11:120698800-120701400	Enhancers	Brain Anterior Caudate	brain
7	chr11:120698800-120703400	Enhancers	Brain Germinal Matrix	brain
8	chr11:120699000-120703200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:120699200-120702000	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr11:120699200-120703400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr11:120699400-120701400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr11:120699400-120729200	Weak transcription	Fetal Lung	lung
13	chr11:120699800-120701400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr11:120700000-120703200	Weak transcription	Fetal Brain Male	brain
15	chr11:120700600-120702000	Enhancers	Brain Angular Gyrus	brain
16	chr11:120700800-120705800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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