Variant report

Variant	rs10895270
Chromosome Location	chr11:102062064-102062065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102058692..102060384-chr11:102061803..102064190,2	K562	blood:
2	chr11:102060953..102063076-chr11:102065365..102067692,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10791566	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10791569	0.91[EUR][1000 genomes]
rs10895269	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10895271	0.93[EUR][1000 genomes]
rs11225153	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11225155	0.90[ASN][1000 genomes]
rs11225169	0.90[EUR][1000 genomes]
rs12222063	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1820454	0.90[EUR][1000 genomes]
rs1942683	0.90[ASN][1000 genomes]
rs2114308	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2846836	0.86[EUR][1000 genomes]
rs2846837	0.86[EUR][1000 genomes]
rs4420227	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4561174	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4754836	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61893575	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7104685	0.91[EUR][1000 genomes]
rs7106107	0.91[EUR][1000 genomes]
rs7107909	0.89[EUR][1000 genomes]
rs7110355	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv832251	chr11:102012295-102181744	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv1043388	chr11:102017719-102172857	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102028000-102062800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr11:102029200-102067600	Weak transcription	HSMMtube	muscle
3	chr11:102034600-102076800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:102036000-102069400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:102041600-102062400	Weak transcription	Left Ventricle	heart
6	chr11:102043800-102077000	Weak transcription	Esophagus	oesophagus
7	chr11:102043800-102100400	Weak transcription	Pancreas	Pancrea
8	chr11:102046800-102076600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:102048200-102062400	Weak transcription	Liver	Liver
10	chr11:102048400-102065200	Weak transcription	Aorta	Aorta
11	chr11:102048400-102073600	Weak transcription	Psoas Muscle	Psoas
12	chr11:102048400-102077200	Weak transcription	Lung	lung
13	chr11:102050400-102076600	Weak transcription	Placenta	Placenta
14	chr11:102051400-102076600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:102052000-102062400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:102052000-102076600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:102056000-102063200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:102056000-102078400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:102056200-102074800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:102057200-102066800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:102057800-102063400	Weak transcription	HMEC	breast
22	chr11:102057800-102065600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:102058000-102066000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:102058200-102062200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:102058200-102062400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:102058200-102063000	Weak transcription	NHEK	skin
27	chr11:102058200-102063200	Weak transcription	HSMM	muscle
28	chr11:102058200-102065600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr11:102058200-102066000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr11:102058200-102066000	Weak transcription	Hela-S3	cervix
31	chr11:102058200-102067000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr11:102058200-102076800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr11:102058600-102065000	Weak transcription	NH-A	brain
34	chr11:102058600-102068200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:102058800-102062400	Enhancers	HepG2	liver
36	chr11:102058800-102062600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr11:102058800-102063600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:102058800-102065600	Weak transcription	Fetal Muscle Leg	muscle
39	chr11:102058800-102067200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:102059000-102063400	Weak transcription	Osteobl	bone
41	chr11:102059200-102062800	Weak transcription	NHLF	lung
42	chr11:102059200-102067600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:102059400-102062600	Weak transcription	Adipose Nuclei	Adipose
44	chr11:102059400-102063000	Weak transcription	Colon Smooth Muscle	Colon
45	chr11:102059600-102062400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr11:102059600-102062400	Weak transcription	NHDF-Ad	bronchial
47	chr11:102059600-102062600	Weak transcription	Fetal Heart	heart
48	chr11:102059600-102063200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:102059600-102063400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:102059600-102063600	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links