Variant report

Variant	rs10895283
Chromosome Location	chr11:102123748-102123749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10791570	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895280	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10895282	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11225177	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35588846	0.94[ASN][1000 genomes]
rs57592482	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60306966	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61280272	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7112802	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs718891	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7927668	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9795150	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9795508	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv832251	chr11:102012295-102181744	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1043388	chr11:102017719-102172857	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102113400-102124200	Weak transcription	Pancreas	Pancrea
2	chr11:102116000-102126600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:102117200-102130200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:102118800-102123800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:102118800-102124000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:102118800-102124200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:102118800-102124200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:102122000-102124400	Enhancers	NHDF-Ad	bronchial
9	chr11:102122400-102124600	Weak transcription	Esophagus	oesophagus
10	chr11:102122600-102124200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:102122600-102124600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:102122800-102124600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:102122800-102124600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:102123000-102123800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr11:102123000-102123800	Enhancers	NH-A	brain
16	chr11:102123000-102123800	Enhancers	Osteobl	bone
17	chr11:102123000-102124000	Enhancers	HSMM	muscle
18	chr11:102123000-102124400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:102123000-102124400	Enhancers	NHLF	lung
20	chr11:102123000-102124600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:102123000-102124800	Enhancers	Fetal Intestine Large	intestine
22	chr11:102123000-102124800	Enhancers	Fetal Lung	lung
23	chr11:102123200-102124000	Enhancers	Hela-S3	cervix
24	chr11:102123200-102124600	Enhancers	HMEC	breast
25	chr11:102123200-102124800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:102123200-102124800	Enhancers	Duodenum Mucosa	Duodenum
27	chr11:102123200-102124800	Enhancers	NHEK	skin
28	chr11:102123200-102125000	Enhancers	Fetal Intestine Small	intestine
29	chr11:102123400-102123800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:102123400-102125200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:102123600-102124400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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