Variant report

Variant	rs10895366
Chromosome Location	chr11:102697089-102697090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1010698	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10791596	0.87[EUR][1000 genomes]
rs10895364	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10895365	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11225434	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1144396	0.85[EUR][1000 genomes]
rs12792871	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12801529	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12804136	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2097248	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2155013	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2212637	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4754884	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs520540	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs526215	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs565082	0.86[EUR][1000 genomes]
rs573521	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs575027	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs591058	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs595840	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs602128	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs617819	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs632478	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs633962	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs635746	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs639752	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs645419	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6590993	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6590994	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs666734	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs678815	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs679620	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7117013	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7126392	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs756544	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7926920	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7946057	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898335	chr11:102682285-102866158	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102690800-102700800	Weak transcription	Stomach Mucosa	stomach
2	chr11:102695400-102700200	Weak transcription	NHDF-Ad	bronchial
3	chr11:102695800-102700200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:102696200-102700000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:102696600-102697200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:102696600-102697200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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