Variant report

Variant	rs10895786
Chromosome Location	chr11:105050772-105050773
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1483025	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1503399	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1630085	0.82[EUR][1000 genomes]
rs1699073	1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs1699083	0.82[EUR][1000 genomes]
rs1699086	0.82[YRI][hapmap];0.81[EUR][1000 genomes]
rs1699087	0.81[EUR][1000 genomes]
rs1699095	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1785864	1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1785871	0.81[EUR][1000 genomes]
rs1785872	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1785873	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1785876	0.82[EUR][1000 genomes]
rs1785882	0.81[EUR][1000 genomes]
rs1792753	0.81[EUR][1000 genomes]
rs1792755	0.82[EUR][1000 genomes]
rs1792756	0.82[EUR][1000 genomes]
rs1792757	0.85[EUR][1000 genomes]
rs1792770	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1792777	0.83[EUR][1000 genomes]
rs1847293	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2174158	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3736149	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7932543	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv3385159	chr11:104786549-105051555	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv528789	chr11:105014564-105133046	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1045900	chr11:105015999-105138877	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv556220	chr11:105042650-105112018	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv2762942	chr11:105044258-105066898	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv38978	chr11:105049275-105051786	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
13	nsv442242	chr11:105049805-105066898	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10895786	CARD17	cis	Esophagus Mucosa	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105048600-105052000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:105048600-105052200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:105048600-105052200	Weak transcription	NHLF	lung
4	chr11:105048600-105052400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:105048600-105052400	Weak transcription	NHDF-Ad	bronchial
6	chr11:105048800-105051800	Weak transcription	NH-A	brain
7	chr11:105049000-105052200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:105049200-105052400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:105050200-105050800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr11:105050200-105051000	Enhancers	Fetal Heart	heart
11	chr11:105050200-105051000	Enhancers	Fetal Intestine Small	intestine
12	chr11:105050200-105051000	Enhancers	HepG2	liver
13	chr11:105050200-105053000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:105050200-105055000	Enhancers	Primary monocytes fromperipheralblood	blood

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