Variant report

Variant	rs10896041
Chromosome Location	chr11:65536678-65536679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65535843..65537390-chr11:65551985..65554887,2	MCF-7	breast:
2	chr11:65534494..65538893-chr11:65617709..65620478,3	K562	blood:
3	chr11:65528026..65529884-chr11:65535933..65538399,2	K562	blood:
4	chr11:65536622..65537945-chr11:65585138..65586153,5	MCF-7	breast:
5	chr11:65534519..65536964-chr11:65583133..65585899,2	K562	blood:
6	chr11:65536504..65538956-chr11:65583165..65585823,2	K562	blood:
7	chr11:65535765..65538772-chr11:65624238..65628078,4	MCF-7	breast:
8	chr11:65508695..65511331-chr11:65535308..65536839,2	MCF-7	breast:
9	chr11:65530310..65533560-chr11:65535934..65539165,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1193496	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12146493	0.84[ASN][1000 genomes]
rs12293022	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12801731	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2508301	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2508303	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs495961	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs498354	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs502468	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs522800	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs546202	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs570954	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs574483	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs603645	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs610037	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs614771	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61895666	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61895677	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs669742	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
2	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
3	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
4	nsv897758	chr11:65490756-65564035	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65530400-65537000	Weak transcription	Primary B cells from cord blood	blood
2	chr11:65532400-65542200	Weak transcription	A549	lung
3	chr11:65532400-65542600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:65532600-65544000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:65533000-65538000	Weak transcription	HepG2	liver
6	chr11:65533000-65542000	Weak transcription	Fetal Intestine Small	intestine
7	chr11:65533600-65543600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:65534200-65536800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr11:65534200-65544600	Weak transcription	Osteobl	bone
10	chr11:65534400-65542200	Enhancers	Placenta	Placenta
11	chr11:65534400-65542200	Weak transcription	NHDF-Ad	bronchial
12	chr11:65534400-65543800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:65535400-65536800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:65536000-65542200	Weak transcription	Hela-S3	cervix
15	chr11:65536400-65541400	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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