Variant report

Variant	rs1089605
Chromosome Location	chr7:145945238-145945239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs28481814	0.85[ASN][1000 genomes]
rs28562996	0.85[ASN][1000 genomes]
rs28625703	0.85[ASN][1000 genomes]
rs61407196	0.85[ASN][1000 genomes]
rs6960811	0.81[ASN][1000 genomes]
rs6965190	0.81[ASN][1000 genomes]
rs6977130	0.88[ASN][1000 genomes]
rs802518	0.83[EUR][1000 genomes]
rs802519	0.83[EUR][1000 genomes]
rs802520	0.83[EUR][1000 genomes]
rs802521	0.83[EUR][1000 genomes]
rs802522	0.83[EUR][1000 genomes]
rs802523	0.80[AMR][1000 genomes]
rs802566	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1030541	chr7:145883107-146022564	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv5992	chr7:145922744-145967420	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv608928	chr7:145928429-145952946	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv533345	chr7:145934546-146134958	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv933622	chr7:145935381-145995971	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1025196	chr7:145939066-145977303	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv539174	chr7:145939066-145977303	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1015596	chr7:145942590-145992294	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145941000-145946000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:145941200-145946200	Active TSS	H9 Cell Line	embryonic stem cell
3	chr7:145942600-145946000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:145942600-145946200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:145942600-145946400	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr7:145942600-145946400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:145942800-145946200	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr7:145942800-145946400	Active TSS	H1 Cell Line	embryonic stem cell
9	chr7:145943000-145946600	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr7:145943200-145946400	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr7:145943200-145946600	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr7:145943600-145946000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:145943800-145946600	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr7:145944200-145946000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:145944400-145946400	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr7:145945000-145945400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:145945000-145945600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:145945000-145945800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:145945000-145946000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:145945200-145946000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr7:145945200-145946000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr7:145945200-145946000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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