Variant report

Variant	rs10896612
Chromosome Location	chr11:57139752-57139753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10400305	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10792093	0.87[ASN][1000 genomes]
rs10896613	0.87[ASN][1000 genomes]
rs11229017	0.87[ASN][1000 genomes]
rs12272063	0.87[ASN][1000 genomes]
rs12575356	0.89[ASN][1000 genomes]
rs1867128	1.00[ASN][1000 genomes]
rs2846396	0.89[ASN][1000 genomes]
rs4411290	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102952	0.87[ASN][1000 genomes]
rs7107352	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57117600-57140000	Weak transcription	Right Atrium	heart
2	chr11:57136400-57140000	Weak transcription	Left Ventricle	heart
3	chr11:57136400-57140400	Weak transcription	K562	blood
4	chr11:57137800-57140000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:57138400-57140000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:57138600-57140000	Weak transcription	Adipose Nuclei	Adipose
7	chr11:57138800-57144200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:57139000-57143200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:57139200-57140000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr11:57139200-57143000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr11:57139600-57140000	Weak transcription	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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