Variant report

Variant	rs10896656
Chromosome Location	chr11:57668941-57668942
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10792112	0.81[EUR][1000 genomes]
rs10896661	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896662	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229131	0.81[EUR][1000 genomes]
rs11229148	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11229160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601320	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12360939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790660	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12798206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12807250	0.81[EUR][1000 genomes]
rs12807357	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2509808	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs589914	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs631791	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs641325	0.86[EUR][1000 genomes]
rs644883	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6591434	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs674094	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs682503	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs708228	0.81[EUR][1000 genomes]
rs7117205	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71484468	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7932091	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7936998	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9645687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv1040913	chr11:57315006-57696122	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
5	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57660600-57671200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:57664600-57672000	Weak transcription	Right Atrium	heart
3	chr11:57666200-57670800	Enhancers	NHEK	skin
4	chr11:57666200-57673000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr11:57666200-57673200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:57666400-57669200	Enhancers	Fetal Intestine Large	intestine
7	chr11:57666400-57671200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:57666400-57671200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:57666400-57672000	Enhancers	HMEC	breast
10	chr11:57666800-57672000	Enhancers	Fetal Intestine Small	intestine
11	chr11:57667800-57669000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:57667800-57670400	Enhancers	Esophagus	oesophagus
13	chr11:57667800-57671000	Enhancers	Hela-S3	cervix
14	chr11:57667800-57671800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:57667800-57673000	Enhancers	Stomach Mucosa	stomach
16	chr11:57668000-57669200	Enhancers	Duodenum Mucosa	Duodenum
17	chr11:57668000-57671800	Enhancers	Placenta Amnion	Placenta Amnion
18	chr11:57668200-57669000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:57668200-57669000	Enhancers	Colonic Mucosa	Colon
20	chr11:57668400-57669000	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:57668400-57669600	Flanking Active TSS	K562	blood
22	chr11:57668400-57670400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:57668600-57670800	Enhancers	Placenta	Placenta

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