Variant report

Variant	rs10896930
Chromosome Location	chr11:58926016-58926017
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58921112..58922649-chr11:58924123..58926292,2	MCF-7	breast:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10128605	0.86[EUR][1000 genomes]
rs10128661	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10437720	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10792219	1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs10792221	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10896914	0.88[EUR][1000 genomes]
rs10896922	1.00[CHB][hapmap];0.92[EUR][1000 genomes]
rs10896924	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs10896925	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10896926	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896928	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10896929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896931	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10896932	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10896933	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10896934	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10896935	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10896936	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896937	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896938	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10896947	0.89[YRI][hapmap]
rs11229798	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs11229799	1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs11229800	1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs11229801	0.90[EUR][1000 genomes]
rs11229837	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11229840	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11229848	0.94[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11229849	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11229850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11229851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11229852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229856	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11229861	0.81[AFR][1000 genomes]
rs11823977	0.94[EUR][1000 genomes]
rs11825017	0.94[EUR][1000 genomes]
rs12271831	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12272113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12275487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12278163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12283633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292185	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12293649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12293695	1.00[CEU][hapmap];0.80[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12362905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12802129	0.94[EUR][1000 genomes]
rs17153379	0.94[EUR][1000 genomes]
rs17153383	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17153415	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1938588	0.94[EUR][1000 genomes]
rs1938589	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1938781	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2096544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2096586	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2096587	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2105506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2105507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2154628	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2186380	1.00[CEU][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2282482	0.92[EUR][1000 genomes]
rs2282483	0.91[EUR][1000 genomes]
rs2839968	0.89[YRI][hapmap]
rs2849739	0.84[EUR][1000 genomes]
rs34027305	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34239454	0.90[EUR][1000 genomes]
rs34501069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35293773	0.90[EUR][1000 genomes]
rs3802961	0.94[EUR][1000 genomes]
rs474847	0.90[EUR][1000 genomes]
rs55657403	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55689653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55989038	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56137001	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56239606	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58722008	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61902181	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61902223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126078	0.94[EUR][1000 genomes]
rs7933787	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7950880	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv2758272	chr11:58700092-59008673	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2759830	chr11:58700092-59008673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	esv1821250	chr11:58925860-59059179	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58924800-58926400	Enhancers	Primary B cells from peripheral blood	blood
2	chr11:58925600-58926200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:58925600-58926200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:58925600-58926400	Enhancers	Adipose Nuclei	Adipose
5	chr11:58925800-58926200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:58925800-58926200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr11:58925800-58926200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr11:58925800-58926400	Enhancers	Brain Anterior Caudate	brain
9	chr11:58925800-58926400	Enhancers	NHDF-Ad	bronchial
10	chr11:58926000-58926200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr11:58926000-58926200	Active TSS	Primary hematopoietic stem cells	blood
12	chr11:58926000-58926200	Active TSS	Fetal Kidney	kidney
13	chr11:58926000-58926400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr11:58926000-58926400	Active TSS	Monocytes-CD14+_RO01746	blood
15	chr11:58926000-58927000	Weak transcription	Primary B cells from cord blood	blood
16	chr11:58926000-58931600	Weak transcription	GM12878-XiMat	blood

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