Variant report

Variant	rs10897424
Chromosome Location	chr11:63258416-63258417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:23)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:23 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr11:63258112-63258588	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTBP2	chr11:63258242-63258793	H1-hESC	embryonic stem cell:	n/a	n/a
3	RAD21	chr11:63258381-63258855	H1-hESC	embryonic stem cell:	n/a	n/a
4	GTF2F1	chr11:63258136-63258429	H1-hESC	embryonic stem cell:	n/a	n/a
5	E2F6	chr11:63257716-63258419	H1-hESC	embryonic stem cell:	n/a	n/a
6	TAF1	chr11:63257972-63258870	H1-hESC	embryonic stem cell:	n/a	n/a
7	RAD21	chr11:63258081-63258431	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr11:63257255-63258778	H1-hESC	embryonic stem cell:	n/a	n/a
9	TAF7	chr11:63258388-63258839	H1-hESC	embryonic stem cell:	n/a	n/a
10	CHD1	chr11:63257899-63258957	H1-hESC	embryonic stem cell:	n/a	n/a
11	SIN3AK20	chr11:63258205-63258535	H1-hESC	embryonic stem cell:	n/a	n/a
12	YY1	chr11:63257883-63258488	H1-hESC	embryonic stem cell:	n/a	n/a
13	SIN3A	chr11:63258041-63258542	H1-hESC	embryonic stem cell:	n/a	n/a
14	E2F6	chr11:63257257-63258654	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr11:63258017-63258885	H1-hESC	embryonic stem cell:	n/a	n/a
16	TBP	chr11:63258000-63258844	H1-hESC	embryonic stem cell:	n/a	n/a
17	RAD21	chr11:63258034-63258494	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr11:63258350-63259524	NB4	blood:	n/a	n/a
19	POLR2A	chr11:63258225-63258505	H1-hESC	embryonic stem cell:	n/a	n/a
20	GABPA	chr11:63258309-63258718	H1-hESC	embryonic stem cell:	n/a	chr11:63258675-63258684 chr11:63258695-63258709
21	GATA1	chr11:63257469-63259689	PBDE	blood:	n/a	n/a
22	TEAD4	chr11:63258165-63258575	H1-hESC	embryonic stem cell:	n/a	n/a
23	POLR2A	chr11:63258279-63258588	H1-hESC	embryonic stem cell:	n/a	n/a

No data

Variant related genes	Relation type
HRASLS5	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2732324	0.97[AFR][1000 genomes]
rs2732325	0.97[AFR][1000 genomes]
rs2849651	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv972926	chr11:63235663-63258845	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv3364622	chr11:63247425-63274716	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63257200-63258600	Flanking Active TSS	HSMMtube	muscle
2	chr11:63257400-63259000	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr11:63257400-63259000	Active TSS	Rectal Smooth Muscle	rectum
4	chr11:63257400-63259800	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr11:63257600-63258600	Flanking Active TSS	HSMM	muscle
6	chr11:63257600-63258800	Enhancers	Fetal Brain Male	brain
7	chr11:63257600-63259000	Active TSS	Pancreas	Pancrea
8	chr11:63257600-63259400	Enhancers	Spleen	Spleen
9	chr11:63257600-63259600	Active TSS	H9 Cell Line	embryonic stem cell
10	chr11:63257800-63258600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:63257800-63259000	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:63257800-63259000	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr11:63257800-63259000	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr11:63257800-63259400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
15	chr11:63258000-63258800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:63258000-63258800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
17	chr11:63258000-63258800	Bivalent/Poised TSS	Fetal Stomach	stomach
18	chr11:63258000-63258800	Transcr. at gene 5' and 3'	Right Atrium	heart
19	chr11:63258000-63259000	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr11:63258000-63259000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:63258000-63259000	Active TSS	Colon Smooth Muscle	Colon
22	chr11:63258000-63259000	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
23	chr11:63258000-63259000	Weak transcription	Hela-S3	cervix
24	chr11:63258000-63259200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr11:63258000-63259200	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr11:63258000-63259400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
27	chr11:63258000-63259600	Active TSS	HUES6 Cell Line	embryonic stem cell
28	chr11:63258000-63259600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
29	chr11:63258000-63259800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:63258000-63260800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:63258200-63258600	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:63258200-63258600	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
33	chr11:63258200-63258600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr11:63258200-63258600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:63258200-63258600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:63258200-63258600	Active TSS	Fetal Brain Female	brain
37	chr11:63258200-63258600	Bivalent/Poised TSS	Fetal Lung	lung
38	chr11:63258200-63258600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
39	chr11:63258200-63258600	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr11:63258200-63258600	Bivalent/Poised TSS	NH-A	brain
41	chr11:63258200-63258800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:63258200-63258800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:63258200-63258800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:63258200-63258800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
45	chr11:63258200-63258800	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
46	chr11:63258200-63258800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
47	chr11:63258200-63258800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
48	chr11:63258200-63258800	Bivalent Enhancer	Stomach Mucosa	stomach
49	chr11:63258200-63258800	Bivalent/Poised TSS	NHEK	skin
50	chr11:63258200-63258800	Bivalent/Poised TSS	Osteobl	bone

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