Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84969189..84971116-chr11:84973618..84975887,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1227842	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1227843	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1238728	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1377302	1.00[JPT][hapmap]
rs1377303	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1452928	0.90[CHD][hapmap]
rs1826613	0.90[CHD][hapmap]
rs490286	1.00[JPT][hapmap]
rs560214	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs578782	1.00[CHB][hapmap]
rs589093	1.00[JPT][hapmap]
rs595435	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs601375	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs617231	0.86[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs626531	0.86[CHB][hapmap]
rs630948	0.82[JPT][hapmap]
rs631370	0.86[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs675217	1.00[JPT][hapmap]
rs679745	0.86[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs7102107	0.86[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap]
rs7118119	0.86[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap]
rs9634002	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9634003	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9634004	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9634018	0.86[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84965200-84977000	Weak transcription	Aorta	Aorta
2	chr11:84967800-85019400	Weak transcription	Ovary	ovary
3	chr11:84969400-84977200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:84972800-84980200	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:84974600-84976000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:84974800-84975600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr11:84974800-84978600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:84974800-84998400	Weak transcription	HSMMtube	muscle
9	chr11:84975200-84982200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search: