Variant report

Variant	rs10898463
Chromosome Location	chr11:85980073-85980074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85955083..85957897-chr11:85979233..85982027,2	K562	blood:
2	chr11:85978505..85980119-chr11:86012077..86014955,2	K562	blood:
3	chr11:85954640..85957647-chr11:85979944..85983156,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149196	Chromatin interaction
ENSG00000074266	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10751137	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs10792841	0.94[EUR][1000 genomes]
rs10792842	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs10792843	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10898449	0.81[EUR][1000 genomes]
rs10898452	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10898457	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs10898458	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs10898459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898461	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898462	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11234594	0.94[EUR][1000 genomes]
rs11234596	0.81[EUR][1000 genomes]
rs12284085	0.93[EUR][1000 genomes]
rs1466804	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1497725	0.95[EUR][1000 genomes]
rs1497726	0.94[EUR][1000 genomes]
rs1874694	0.89[EUR][1000 genomes]
rs2270680	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2270681	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs3758881	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs6592279	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101712	1.00[CEU][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7120070	0.87[EUR][1000 genomes]
rs7120222	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs7924472	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs7942971	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7950820	0.94[EUR][1000 genomes]
rs7951030	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs7951188	0.94[EUR][1000 genomes]
rs974144	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs991435	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898055	chr11:85968623-86000757	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10898463	EED	Cis_1M	lymphoblastoid	RTeQTL
rs10898463	C11orf73	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85957200-85995400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:85957400-85985600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:85957400-86008000	Weak transcription	Psoas Muscle	Psoas
4	chr11:85957800-85997200	Weak transcription	Colonic Mucosa	Colon
5	chr11:85957800-85999800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:85958400-85997200	Weak transcription	Brain Germinal Matrix	brain
7	chr11:85959200-85988000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:85959200-85988600	Weak transcription	Brain Angular Gyrus	brain
9	chr11:85959200-85997600	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:85959400-85995000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:85960200-85985600	Weak transcription	Gastric	stomach
12	chr11:85960800-85988000	Weak transcription	Fetal Heart	heart
13	chr11:85961000-85996000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr11:85961000-85997000	Weak transcription	Stomach Mucosa	stomach
15	chr11:85961400-85980600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:85961400-85985800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:85961600-85998000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:85961800-85988000	Weak transcription	Brain Substantia Nigra	brain
19	chr11:85963000-85984400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:85964000-85995000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr11:85964400-85987600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr11:85966000-85992000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:85966200-85991600	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr11:85967000-85991600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr11:85967800-85981200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:85968800-85988800	Weak transcription	HSMMtube	muscle
27	chr11:85969200-85987400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr11:85969200-85988200	Weak transcription	NH-A	brain
29	chr11:85969200-85995200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr11:85969800-85988400	Weak transcription	Fetal Brain Male	brain
31	chr11:85972400-85982000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:85973000-85985600	Weak transcription	Pancreas	Pancrea
33	chr11:85973000-85989200	Weak transcription	NHLF	lung
34	chr11:85973000-85995000	Weak transcription	Lung	lung
35	chr11:85973000-85995000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr11:85973000-85995600	Weak transcription	Small Intestine	intestine
37	chr11:85973200-85987400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:85973400-85980200	Strong transcription	GM12878-XiMat	blood
39	chr11:85973400-85995000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:85973800-85992800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr11:85973800-85995000	Weak transcription	Fetal Brain Female	brain
42	chr11:85974000-85984000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:85974000-85985600	Weak transcription	Ovary	ovary
44	chr11:85974200-85995200	Weak transcription	Esophagus	oesophagus
45	chr11:85974400-85985600	Weak transcription	Spleen	Spleen
46	chr11:85974400-85987800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:85974800-85985600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:85974800-85988600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:85974800-85995000	Weak transcription	Right Ventricle	heart
50	chr11:85974800-85995000	Weak transcription	Thymus	Thymus

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